BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB019F12SP1|AL427514
(337 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1717 526 e-149
>3x_Contig1717
Length = 18389
Score = 526 bits (261), Expect = e-149
Identities = 317/336 (94%), Gaps = 5/336 (1%)
Strand = Plus / Minus
Query: 1 ctccacatmtcgacgattatcaattttcacaacacacacactagactgtacggttcataa 60
||||| || ||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 12158 ctccaaatatcgacgattatgaattttcacaacacacacactg--ctgtacggttcataa 12101
Query: 61 acgtcaattttttttcattcawgaaatgagaaaaattwtcaaattaggacacagatagat 120
||||||||||||||||||||| |||||| ||| |||| ||||||||||||||||||||||
Sbjct: 12100 acgtcaattttttttcattcatgaaatg-gaataattttcaaattaggacacagatagat 12042
Query: 121 gacattgagtagtawatactgtrttaatttaacacaaatacacttacacatcaaaacaaa 180
|| ||||||||||| ||||||| |||||||||||||| ||||||||||| ||||||||||
Sbjct: 12041 gagattgagtagtatatactgtgttaatttaacacaa-tacacttacac-tcaaaacaaa 11984
Query: 181 aaatttgttagcacacgacacgacacacgacacacattcacgacacrcagcaacgacata 240
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 11983 aaatttgttagcacgcgacacgacacacgacacacattcacgacacgcagcaacgacata 11924
Query: 241 ggtaaggtagwagaataatataggtaattcatggaatcaaacaaccaagtaaaaaaaaaa 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11923 ggtaaggtagtagaataatataggtaattcatggaatcaaacaaccaagtaaaaaaaaaa 11864
Query: 301 cgaaataaaaaaraacaatcaaatcatttcctatgc 336
|||||||||||| |||||||||||||||||||||||
Sbjct: 11863 cgaaataaaaaagaacaatcaaatcatttcctatgc 11828
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.40 0.714 1.32
Gapped
Lambda K H
1.40 0.714 1.32
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3753
Number of Sequences: 1807
Number of extensions: 3753
Number of successful extensions: 130
Number of sequences better than 1.0e-20: 1
length of query: 337
length of database: 10,358,551
effective HSP length: 15
effective length of query: 322
effective length of database: 10,331,446
effective search space: 3326725612
effective search space used: 3326725612
T: 0
A: 40
X1: 5 (10.1 bits)
X2: 14 (28.2 bits)
S1: 12 (24.7 bits)
S2: 49 (99.2 bits)